PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29728.m000841
Common NameRCOM_0686820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 357aa    MW: 39857.7 Da    PI: 5.3833
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29728.m000841genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.5e-07273294223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     C++Cgk F+r  nL+ H+r H
  29728.m000841 273 FCTICGKGFKRDANLRMHMRGH 294
                    6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-5270297No hitNo description
SMARTSM003550.0026272294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03272299IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-6273322IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280274294IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDRKERLCTE TWANSSSSGS GLPEHLSTEK PSFANFSSQQ DQQKWEDTAI YGIRTDPPFQ  60
EFNLPSETQT LLPSNPDDQI KIMDEEDSHI NEALQINKIP DWDPKAMLSN LSFLEQKIHQ  120
LQDLVHLIVG RRGQILERPD DLVAQQQQLI TADLTSIIVQ LISTAGSLLP SVKHTLFAAT  180
PGGQLGHLGE ILFPSGMGMN SIVQPQHSSG NKLSHHSNQM DISGNCGTEQ NYSVDEHELK  240
DEEDVEEGEN LPPGSYEILQ LEKEEILAPH THFCTICGKG FKRDANLRMH MRGHGDEYKT  300
PAALAKPNKE SSSEPVLKRY SCPFAGCKRN KDHKNYNLGI GYLSPPLNNL KINKMAI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579426.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1, partial
SwissprotQ9C8N51e-113STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLB9SLH50.0B9SLH5_RICCO; Putative uncharacterized protein
STRINGVIT_18s0072g00840.t011e-166(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53403254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-102C2H2 family protein